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Source database (GenBank or RefSeq) File type

ASM3026992v2

Organism name:

Bombyx mori (domestic silkworm)

Infraspecific name:

Strain: p50T

BioSample:

SAMD00586865

BioProject:

PRJDB15448

Submitter:

Shimada-lab Faculty of Science Department of Life Science, Gakushuin University

Date:

2023/07/06

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_030269925.2 (latest)

RefSeq assembly accession:

GCF_030269925.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

Assembly method:

Hifiasm v. 0.16.1; Bionano Solve v. 3.7

Genome coverage:

180x

Sequencing technology:

PacBio Sequel lle; Bionano Saphyr

IDs: 17985161 [UID] 46013608 [GenBank] 53000458 [RefSeq]

See Genome Information for Bombyx mori

Pathogen Detection Resources

There are 9 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_030269925.2	≠	GCF_030269925.1	ASM3026992v2	Chromosome	Latest GenBank, Latest RefSeq
GCA_030269925.1	n/a	n/a	BmF-NBRP_1.0	Scaffold	Replaced GenBank

Comment

Assembly name: ASM3026992v2
The genomic sequence for this RefSeq record is from the whole-genome assembly released by the Shimada-lab Faculty of Science Department of Life Science, Gakushuin University on 2023/07/06.

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Status::Full annotation
Annotation Name::GCF_030269925.1-RS_2024_01
Annotation Pipeline::NCBI eukaryotic genome annotation pipeline
Annotation Software Version::10.2
URL Organism::Bombyx_mori
Annotation Method::Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE
Features Annotated::Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	461,704,601
Total ungapped length	459,989,354
Gaps between scaffolds	0
Number of scaffolds	30
Scaffold N50	16,894,347
Scaffold L50	13
Number of contigs	508
Contig N50	15,957,419
Contig L50	13
Total number of chromosomes and plasmids	30
Number of component sequences (WGS or clone)	30

Molecule name	GenBank sequence		RefSeq sequence
Chromosome 1	AP028171.1	=	NC_085107.1
Chromosome 2	AP028172.1	=	NC_085108.1
Chromosome 3	AP028173.1	=	NC_085109.1
Chromosome 4	AP028174.1	=	NC_085110.1
Chromosome 5	AP028175.1	=	NC_085111.1
Chromosome 6	AP028176.1	=	NC_085112.1
Chromosome 7	AP028177.1	=	NC_085113.1
Chromosome 8	AP028178.1	=	NC_085114.1
Chromosome 9	AP028179.1	=	NC_085115.1
Chromosome 10	AP028180.1	=	NC_085116.1
Chromosome 11	AP028181.1	=	NC_085117.1
Chromosome 12	AP028182.1	=	NC_085118.1
Chromosome 13	AP028183.1	=	NC_085119.1
Chromosome 14	AP028184.1	=	NC_085120.1
Chromosome 15	AP028185.1	=	NC_085121.1
Chromosome 16	AP028186.1	=	NC_085122.1
Chromosome 17	AP028187.1	=	NC_085123.1
Chromosome 18	AP028188.1	=	NC_085124.1
Chromosome 19	AP028189.1	=	NC_085125.1
Chromosome 20	AP028190.1	=	NC_085126.1
Chromosome 21	AP028191.1	=	NC_085127.1
Chromosome 22	AP028192.1	=	NC_085128.1
Chromosome 23	AP028193.1	=	NC_085129.1
Chromosome 24	AP028194.1	=	NC_085130.1
Chromosome 25	AP028195.1	=	NC_085131.1
Chromosome 26	AP028196.1	=	NC_085132.1
Chromosome 27	AP028197.1	=	NC_085133.1
Chromosome 28	AP028198.1	=	NC_085134.1
Chromosome W	AP028199.1	=	NC_085135.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	461,688,958	29	459,973,711	16,894,347	478
Chromosome 1	20,733,010	1	20,733,010	20,733,010	0
Chromosome 2	8,414,026	1	8,414,026	8,414,026	0
Chromosome 3	15,277,987	1	15,277,987	15,277,987	0
Chromosome 4	18,979,991	1	18,979,991	18,979,991	0
Chromosome 5	19,040,149	1	19,025,257	19,040,149	8
Chromosome 6	16,776,040	1	16,776,040	16,776,040	0
Chromosome 7	13,996,402	1	13,995,638	13,996,402	1
Chromosome 8	16,310,765	1	16,310,765	16,310,765	0
Chromosome 9	16,919,606	1	16,919,606	16,919,606	0
Chromosome 10	17,797,768	1	17,797,768	17,797,768	0
Chromosome 11	20,805,025	1	20,608,087	20,805,025	74
Chromosome 12	17,838,790	1	17,838,790	17,838,790	0
Chromosome 13	17,885,526	1	17,885,526	17,885,526	0
Chromosome 14	13,341,864	1	13,341,864	13,341,864	0
Chromosome 15	18,559,688	1	18,559,688	18,559,688	0
Chromosome 16	14,454,745	1	14,454,745	14,454,745	0
Chromosome 17	16,894,347	1	16,894,347	16,894,347	0
Chromosome 18	15,957,419	1	15,957,419	15,957,419	0
Chromosome 19	15,031,942	1	14,888,532	15,031,942	26
Chromosome 20	12,711,775	1	12,558,872	12,711,775	22
Chromosome 21	15,385,712	1	15,385,712	15,385,712	0
Chromosome 22	18,552,276	1	18,552,276	18,552,276	0
Chromosome 23	21,557,352	1	21,557,352	21,557,352	0
Chromosome 24	19,285,218	1	18,078,924	19,285,218	345
Chromosome 25	14,584,101	1	14,584,101	14,584,101	0
Chromosome 26	11,612,109	1	11,612,109	11,612,109	0
Chromosome 27	11,089,506	1	11,089,506	11,089,506	0
Chromosome 28	10,674,691	1	10,674,691	10,674,691	0
Chromosome W	11,221,128	1	11,221,082	11,221,128	2

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ASM3026992v2

See Genome Information for Bombyx mori

Pathogen Detection Resources

There are 9 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear